Wednesday, December 7, 2011

Dr. Stanislaw Burzynski's ?personalized gene-targeted cancer ...

Last week, I wrote a magnum opus of a movie review of a movie about a physician and ?researcher? named Stanislaw Burzynski, MD, PhD, founder of the Burzynski Clinic and Burzynski Research Institute in Houston. I refer you to my original post for details, but in brief Dr. Burzynski claimed in the 1970s to have made a major breakthrough in cancer therapy through his discovery of anticancer substances in the urine that he dubbed ?antineoplastons,? which turned out to be mainly modified amino acids and peptides. Since the late 1970s, when he founded his clinic, Dr. Burzynski has been using antineoplastons to treat cancer. Over the last 25 years or so, he has opened a large number of phase I and phase II clinical trials with little or nothing to show for it in terms of convincing evidence of efficacy. Worse, as has been noted in a number of places, high doses of antineoplastons as sodium salts are required, doses so high that severe hypernatremia is a concern.

Although antineoplastons are the dubious cancer therapy upon which Dr. Burzynski built his fame, they aren?t the only thing he does. Despite the promotion of the Burzynski Clinic as using ?nontoxic? therapies that ?aren?t chemotherapy? by ?natural medicine? cranks such as Joe Mercola and Mike Adams, Dr. Burzynski?s dirty little secrets, at least as far as the ?alternative medicine? crowd goes, are that (1) despite all of the attempts of Dr. Burzynski and supporters to portray them otherwise antineoplastons are chemotherapy and (2) Dr. Burzynski uses a lot of conventional chemotherapy. In fact, from my perspective, it appears to me as though over the last few years Dr. Burzynski has pivoted. No longer are antineoplastons the center of attention at his clinic. Rather, these days, he appears to be selling something that he calls ?personalized gene-targeted cancer therapy.? In fact, it?s right there in the first bullet point on his clinic?s webpage, underlined, even! Antineoplastons aren?t even listed until the third bullet point.

But what is ?personalized gene-targeted cancer therapy,? according to Dr. Burzynski? Here is how it is described:

Our approach to cancer is a result of Dr. Burzynski?s extensive experience in cancer research in the field of genetics and genomics.

Personalized Treatments offered by the Burzynski Clinic are individual treatment plans, customized for each patient, based on:

  • Identification of oncogenes responsible for the growth of cancerous cells in individual patients
  • Selection of targeted pharmaceuticals that selectively kill cancer cells carrying the identified abnormal genes

The main goal of a Personalized Treatment is to match the right patient to the right treatment to achieve maximum effectiveness with minimum side effects.

Elsewhere, Dr. Burzynski claims:

In some cases conventional therapy is the most appropriate treatment for a patient. Our Clinic offers customized combination therapies consisting of conventional therapy and other approved targeted therapies to maximize effectiveness while minimizing the side effects that typically occur when using the traditional therapies alone.

And:

There are currently close to 30 targeted therapeutics approved by the FDA (as of January 2011). This number grows rapidly with the advancement of the research in genomics. All of the Food and Drug Administration (FDA)-approved gene-targeted medications are available for treatment at the Burzynski Clinic. The combination of targeted medications is customized for each patient and determined by the type of oncogenes involved in patient?s cancer (Personalized Treatment).

Dr. Burzynski is also not shy about being interviewed by promoters of alternative medicine, such as Mike Adams. For example, here are a typical radio interview (on Oprah Radio, of course!) and videos like this one:

And this one:

Note that the first few minutes of the second video are spent portraying Dr. Burzynski as a ?brave maverick doctor? and pioneer being oppressed, suppressed, and persecuted by The Man, combined with Dr. Burzynski calling the FDA and NCI ?criminal? and using every ?health freedom? argument in the book. Antineoplastons are portrayed as a cancer cure that causes brain tumors to ?vanish in many children.? Finally, around the 4:30 mark, we see Dr. Gregory Burzynski, Dr. Burzynski?s son, talking about genomic profiling of cancers and biomarkers in the blood and in circulating tumor cells. If this segment weren?t embedded in a bunch of paranoid conspiracy mongering about big pharma, the FDA, and the NCI, plus a claim that surgery will no longer be necessary for cancer, what?s left over doesn?t sound too different from what quite a few ?conventional? cancer researchers say about ?personalized medicine.? Well, that and what Dr. Burzynski says about tumor suppressors. He seems to think that all tumor suppressors prevent mutations, which is, of course, not true. Some of them do other things. Be that as it may, the claim made in the video is that, with a combination of antineoplastons and ?personalized therapy,? Dr. Burzynski can cure many cancer patients with stage IV disease. But how credible is this claim? What, exactly, is he doing? It?s hard to figure out from his website, but looking elsewhere can provide hints. In the meantime, let?s start with a description of what ?personalized medicine? means to cutting edge cancer researchers.

?Personalized cancer treatment? in science-based medicine

At the risk of annoying some colleagues I know, I?m going to point out that I never really liked the term ?personalized cancer therapy? or its many variants, for the simple reason that it always struck me as more of a marketing term than a scientifically meaningful description of what targeting therapy to the genetic makeup of a patient?s tumor will eventually entail. In fact, I think I now prefer another term, which has been used by Cancer Research U.K., namely ?stratified medicine.? The reason is that what we as clinicians are doing when we ?personalize? or ?individualize? therapies isn?t really ?personalizing? the therapy so much as using various measurements and biomarkers to place patients into groups of patients who respond to specific therapies. What the modern version of ?personalized? therapy is really doing is producing more and more groups of patients, each of which, is smaller than the last, to be matched to more and more therapies. Whether the groups will eventually reach an N of 1, I don?t know, but that is the goal. Only then will we truly have ?personalized medicine.?

My personal irritation at the proliferation of certain terms notwithstanding, I actually do believe that the stratification and matching of patients with therapies based on genomics, proteomics, and biomarkers is the future of cancer treatment, and, to some extent, the future is now. However, ?personalized? medicine is in its infancy, as I have pointed out in previous posts on the topic, Hope and hype in genomics and ?personalized medicine? and Integrating patient experience into research and clinical medicine: Towards true ?personalized medicine.? True, we do have several targeted therapies that inhibit or target a single important molecule. For instance, in breast cancer, Herceptin (trastuzumab) targets the HER2 oncogene, which is amplified in some breast cancers. Another example, Gleevec (imatinib mesylate), inhibits the tyrosine kinase activity of the bcr-abl oncogene product as well as receptor tyrosine kinases encoded by the c-kit and platelet-derived growth factor receptor oncogenes and is very effective against tumors that make too much of one these oncogenes, such as gastrointestinal stromal tumor and Philadelphia-positive (Ph+) hematological malignancies such as chronic myelogenous leukemia and acute lymphoblastic leukemia. Now, there are numerous other examples, so many that they are listed on the NCI website.

In fact, the idea of targeted therapy in cancer is not new. In fact, as I learned while writing my current grant, arguably the concept dates back over 100 years. Indeed, the very concept of targeted therapy was first applied to breast cancer when oophorectomy (removal of the ovaries) was first proposed as a therapy by Albert Schinzinger in 1889 and then George Thomas Beatson reported seven years later that oophorectomy could bring about complete remissions in young women with inoperable or locally recurrent breast cancer. Decades would pass before the development of the selective estrogen modulator, Tamoxifen, and it would be still more decades before aromatase inhibitors. Moreover, using biomarkers to follow cancer and to predict response to treatment is nothing new either. For example, it?s long been known that the presence of the estrogen receptor (ER) in breast cancer implies that treatment with antiestrogen drugs like Tamoxifen is likely to result in a a response and that lack of ER in a tumor means that Tamoxifen won?t work. Similarly, we?ve used prostate-specific antigen (PSA) as a biomarker for prostate cancer and carcinoembryonic antigen (CEA) as a biomarker for colon cancer for decades. The difference between the way drugs were targeted to cancers a couple of decades ago and now is the explosion of genomics knowledge that has occurred over the last decade. As I?ve pointed out, we are now producing terrabytes and petabytes of genomic data about cancers, a flood of information that we have only relatively recently started seriously developing the tools needed to analyze this flood of data and disciplines (systems biology, bioinformatics, genomics, etc.) to organize and determine how best to translate it into therapies. We even use one such test in breast cancer, the Oncotype DX, assay, which has allowed oncologists to identify patients who can safely skip adjuvant chemotherapy.

What we are learning, as I have lightheartedly appropriated Douglas Adams? masterwork to say before, is that cancer is complicated. You just won?t believe how vastly, hugely, mind-bogglingly complicated it is. I mean, you may think it?s complicated to understand basic cell biology, but that?s just peanuts to cancer. All you have to do is to look at the genetic derangements in typical prostate cancers to get a flavor for how daunting the task of developing personalized treatments of cancer will be, much less curing it. Think of it this way. The examples of genomic derangements in a few prostate cancers were incredible, and there are different sets of genomic derangements that vary by cancer type, of which there are hundreds. Add to that the fact that, as Dr. Burzynski himself emphasizes, cancers are heterogeneous, with different genetic derangements in different parts of the tumor, and you get a flavor of how difficult ?personalizing? cancer therapy based on its genomic makeup and biomarkers will be. It will take an incredible amount of research, both basic and clinical, in order to learn the best ways to match the genomic makeup of patient tumors to the most effective targeted therapies. As a commentary by James H. Doroshow last year noted, even leaving aside the practical obstacles (FDA approval, access to fresh tissue, and the like) at least one huge obstacle remains:

Finally, if these obstacles are surmounted, widespread adoption of a predictive therapeutic biomarker assumes, as a matter of course, that the assay(s) for the biomarker in question is fit for its scientific purpose, and that our understanding of the molecular pathways to be investigated justifies the specific use of a particular portfolio of gene expression or mutational analyses, for example, and these are anything but trivial assumptions.

And there?s the problem. Burzynski?s approach to ?personalized gene-targeted anticancer therapy? appears to fall prey to the assumption that the assays used are fit for the scientific purpose for which he is using them and, even worse, that he knows enough about the molecular pathways to be investigated to reliably use the results of such assays to guide anticancer treatment. In essence, it?s as though Dr. Burzynski read a book called Personalized Cancer Therapy for Dummies and decided he is an expert in genomics-based tailoring of targeted therapies to individual cancer patients. I?ll try to show you what I mean.

What Burzysnki claims he can do with ?personalized gene-targeted therapy?

In order to determine what it is that the Burzynski Clinic is doing that it calls ?personalized gene-targeted cancer therapy,? I started searching around the web. I also had a brief e-mail correspondence with Ren?e Trimble, Director of Public Relations for the Burzynski Institute. She?s the one who, in the wake of Marc Stephens? harassment of bloggers, sent out a press release apologizing for his behavior while at the same time basically saying that the Burzynski Clinic would keep using the legal system to try to silence bloggers who criticize it. However, she was polite with me, probably because of the positions I hold at an NCI-designated comprehensive cancer center. Mostly, her information was only marginally more helpful than what I could find on the Burzynski Clinic website and around the Internet, but she did confirm at least one fact that needed confirming. Then, there is also this video, produced by the Burzynski clinic itself:

What interested me about this video, ironically enough, is how bland and unremarkable a lot of it was. Clearly, the producer went to great lengths to make Burzynski?s lab look like any other molecular and cell biology lab?even like my lab. The other thing that interested me was how the video emphasizes the use of FDA-approved medications. Finally, there was a clue (to me, at least) about what it is that Burzynski is doing. At around the three minute mark, the announcer states:

We combine gene-targeting drugs and low dose chemo, if needed.

Then a very sharply-dressed man named Azad Rastegar appears and says:

The way we look at cancer here at the Burzynski Clinic is that it?s more than just the tumor site. Obviously, that?s very important and significant for figuring out how to address the cancer in the patient, but what we want to do is to identify the genes that are involved in that particular patient?s cancer. With that, then we can start creating more customized and personalized treatment plans that involve gene-targeted medications targeting, obviously, the genes involved in that patient?s cancer. This way we?re able to reduce side effects. We?re able to reduce any time-wasting on ineffective drugs and cater it, obviously, much more to the patients and their individual cancer needs.

It all sounds so reasonable, and, indeed, this is exactly the sort of thing that lots of cancer centers are trying to do. But how this sort of approach is implemented makes all the difference in the world, and the question I had was whether Dr. Burzynski is taking anything resembling the right sort of approach to this problem. From the description above, it sounded very much to me as though Dr. Burzynski is combining various targeted agents with metronomic chemotherapy. I know a thing or two about metronomic chemotherapy, because I was involved in a project whose end result was to be the testing of metronomic chemotherapy against cancer and because the concept is a spinoff of the work of one of my scientific heros, the late Judah Folkman. Basically, metronomic chemotherapy is an approach to chemotherapy that uses repetitive, low doses of chemotherapy drugs (or even continuous infusions of low dose chemotherapy) designed to minimize toxicity and target the tumor blood vessels rather than targeting the tumor cells themselves. The concept behind this strategy is that blood vessels are lined by genetically stable endothelial cells, they do not evolve resistance, and chemotherapy can be antiangiogenic. The drawback to metronomic chemotherapy is that long periods of therapy may be required and the cumulative doses of chemotherapy may end up being actually higher than more standard therapies. On the other hand, this latter aspect may not be a drawback because metronomic chemotherapy may allow a greater cumulative dose, with a concurrent greater cumulative effect. As I wrote before the last time I discussed metronomic chemotherapy, it?s a promising concept, but thus far clinical trials in humans can only be characterized as fairly disappointing.

Whether this is what Dr. Burzynski is doing or not with the chemotherapy part of his approach, I don?t know for sure, but it sure sounds like it. For example, in Knockout: Interviews With Doctors Who Are Curing Cancer and How to Prevent Getting It in the First Place by Suzanne Somers, Dr. Burzynski is interviewed and, ironically, reveals a great deal (to me, at least) about what he is doing. For example:

For the majority of Dr. Burzynski?s patients he does not use any chemotherapy, but for some patients the chemotherapy is used in lower dosages, which are below the threshold of significant side effects. Dr. Burzynski takes advantage of the synergistic effect of such combinations?

Except that he doesn?t demonstrate that these combinations are synergistic in preclinical studies or clinical trials before prescribing them off-label.

Later in the interview, Somers (SS) asks Dr. Burzynski (SB) about breast cancer, and Dr. Burzynski replies:

SS: What about breast cancer?

SB: At the moment we use a different approach. We study which genes in individual patients are abnormal, trying to determine the genetic signature of cancer in these patients. With our methods, we can have answers for the patient in about three days based on blood tests. Once we identify the most important oncogenes involved in cancer for that individual, we select a group of four to six medications from those twenty-four which are now approved by the FDA and use them to hit those genes which are causing the cancer to progress. This is like ?boutique treatment? because for every patient we design a treatment plan. When we do this we have a very good chance to have positive results in most patients.

SS: How many respond?

SB: About 85 per cent for whom we have the proper gene signature; about 15 percent do not respond. In our responders many of them have tumors which disappear completely and in others the tumors remain small. The problem is finding the genetic signature because for many of these different genetic signatures we don?t have blood tests?yet.

Note that at the time this book was published, Dr. Burzynski was claiming that he could identify who would benefit from specific targeted therapies simply from blood tests. If he could do this for real, Burzynski could easily publish in high impact journals like Clinical Cancer Research, the Journal of Clinical Oncology, or another high impact clinical cancer journal. Heck, a result like that could probably make it into general medical journals, such as the New England Journal of Medicine or The Lancet, which have an even higher impact factor. If he were able to demonstrate that his method of testing tumors and picking targeted therapy could result in a complete response rate anywhere near 85% for breast cancer, even more so. If, as he claims later in the chapter, Dr. Burzynski has patients with pancreatic cancer and advanced liver cancer whose tumors have disappeared within two months after he began treatment, the same would be true. If, as Burzynski claims, he achieves a 50% complete response rate in advanced brain tumors, again, the same would be true. He doesn?t submit his results to these journals. Why not? No doubt it?s The Man keeping him down.

So what tests does Dr. Burzynski use to determine the cocktail of targeted therapies to use in any given patient, anyway?

I learned from multiple patient blogs (and it was confirmed by Ms. Trimble) that Dr. Burzyski uses a test from a company called Caris Life Sciences. The test appears to be the Caris Target Now? Molecular Profiling test, and this is how it?s described on the company website:

Caris Life Sciences?? molecular profiling test, Caris Target Now?, examines the genetic and molecular changes unique to a patient?s tumor so that treatment options may be matched to the tumor?s molecular profile.

Caris Target Now helps patients and their treating physicians create a cancer treatment plan based on the tumor tested. By comparing the tumor?s information with data from published clinical studies by thousands of the world?s leading cancer researchers, Caris can help determine which treatments are likely to be most effective and, just as important, which treatments are likely to be ineffective.

The Caris Target Now test is performed after a cancer diagnosis has been established and the patient has exhausted standard of care therapies or if questions in therapeutic management exist. Using tumor samples obtained from a biopsy, the tumor is examined to identify biomarkers that may have an influence on therapy. Using this information, Caris Target Now provides valuable information on the drugs that will be more likely to produce a positive response. Caris Target Now can be used with any solid cancer such as lung cancer, breast cancer, and prostate cancer.

It?s also noted:

Caris Target Now? was developed and its performance characteristics were determined by Caris Life Sciences, a medical laboratory CLIA-certified in compliance with the U.S. Clinical Laboratory Amendment Act of 1988 and all relevant U.S. state regulations. It has not been approved by the United States Food and Drug Administration.

From my perspective, this test looks perfectly fine as a test used for research and clinical trials, but clearly using it to treat patients with off-label cancer drugs outside of a clinical trial is something that I?d be very, very concerned about. But how does it work? It?s described thusly:

Caris Target Now begins with an immunohistochemistry (IHC) analysis. An IHC test measures the level of important proteins in cancer cells providing clues about which therapies are likely to have clinical benefit and then what additional tests should be run.

If there is access to a frozen sample of patient tissue available, Caris Life Sciences? may also run a gene expression analysis by microarray. The microarray test looks for genes in the tumor that are associated with specific treatment options.

As deemed appropriate based on each patient, Caris will run additional tests. Fluorescent In-Situ Hybridization (FISH) is used to examine gene copy number variation in the tumor. Polymerase Chain Reaction (PCR) or DNA sequencing is used to determine gene mutations in the DNA tumor.

Immunohistochemistry is standard for many cancers. For example, in breast cancer, pretty much every pathology lab does immunohistochemistry (using antibodies to detect specific proteins) for at least two proteins, the estrogen receptor and the HER2 oncogene. Sometimes, depending upon the lab and the clinical situation, pathologists will stain for proliferation markers, like Ki-67, or other receptors such as epidermal growth factor receptor. Not uncommonly, pathologists stain for E-cadherin in order to differentiate between two common types of breast cancer, infiltrating ductal carcinoma versus lobular carcinoma. Similarly, breast cancers are often subjected to FISH in order to determine whether the HER2 oncogene is amplified. In other words, none of this is anything particularly remarkable from a clinical standpoint.

What Caris appears to do that?s different from normal clinical evaluation of a tumor sample is, if fresh frozen tissue is available, the performance of cDNA microarray analysis of the messenger RNA isolated from the tumor tissue. cDNA microarrays are a technology that allows scientists to analyze the level of messenger RNA from every known gene in the genome simultaneously. In actuality, technology has moved on from cDNA microarrays, which these days are so 2005, but they?re still good tools and still used to examine differences of thousands of genes simultaneously, either between tissues or in response to drugs or other interventions. Also, newer technology, such as next generation sequencing (NGS) and RNA-Seq. RNA-Seq, for instance, provides the same information that a cDNA microarray does, plus everything else in the transcriptome, such as microRNAs and long non-coding RNAs. microRNAs, in particular, are being appreciated as very important regulators of gene activity because a single microRNA can often regulate hundreds of genes. RNA-Seq is also unbiased in that cDNA microarrays can only measure genes we know, whereas RNA-Seq can be used for discovery of previously unknown RNAs.

However, these techniques are expensive and not yet as common and practical as cDNA microarrays. That Caris isn?t using the latest technology for the test doesn?t mean it might not be potentially worthwhile; after all, a cDNA microarray will detect the levels of all known oncogenes. Caris also apparently does some mutational analysis and fluorescence in situ hybridization (FISH), a test designed to measure gene copy number and thus detect amplified genes. The result is a report like this example report that Caris Life Sciences has posted on one of its websites. The problem, of course, is what a clinician should do with the results. That?s why I say that such a test should probably, except in rare circumstances, only be used for research purposes. Besides, much of what I see isn?t that helpful anyway. For example, if you look at the report, the first agents listed are anthracyclines, such as doxorubicin, because topoisomerase-2A is elevated and taxanes, such as paclitaxel, because TLE3 is elevated. These are basically ?Well, duh!? suggestions, because doxorubicin and paclitaxel are normally standard-of-care chemotherapeutic agents for triple negative breast cancer anyway! Particularly useless is the mention that ?Lack of HER2 amplification has been associated with lack of benefit from HER2-targeted antibody.? No kidding, given that trastuzumab was designed to treat HER2-positive breast cancer and that clinical samples are routinely checked for HER2 amplification as part of the standard-of-care!

As for the other recommendations, the gene associations listed, many of them are based on associations with response to specific therapies in other tumor types, such as irinotecan in ovarian cancer and cisplatin in gastric cancer, small cell lung cancer, for example. The relevance of many of these recommendations to breast cancer is questionable, to say the least. To apply them to individual patients outside the context of a clinical trial is hard to justify except in rare cases, but that?s exactly what Dr. Burzynski appears to be doing for large numbers of his patientss, picking off-label chemotherapeutic agents based on the results of this test and selling it as ?personalized gene-targeted therapy? without letting patients know that (1) the evidence base behind these recommendations is often not relevant to the specific tumors being treated because it?s from different cancers; (2) the studies used to support these recommendations have a lot of uncertainty; and (3) most of these recommendations haven?t been validated in clinical trials.

Even worse, the very concept of ?gene-targeted cancer therapy? hasn?t been convincingly shown to improve cancer outcomes, at least not yet. Believe it or not, I actually am in the camp who believes that eventually such a strategy will be proven useful and revolutionize cancer therapy, but that time is not yet. Gene-targeted cancer therapy is currently in its infancy and, except in rare situations outside of the existing currently validated biomarkers (such as HER2, ER, c-kit, and other genes for which targeted therapies exist) for the response of specific cancers, is not to be undertaken outside of the context of a clinical trial. In essence, Burzynski appears to be using such information on a ?make it up as you go along? sort of fashion. Indeed, an e-mail from Renee Trimble confirmed this suspicion of mine when I pointed out to her that gene-targeted cancer therapy is in its infancy and that in the vast majority of cases we don?t know what to do with this information. I also wanted to know what the Burzynski Clinic was doing that is different from what the major cancer centers are doing. Her answer was, to put it mildly, unsatisfying, as I will discuss in the next section.

Compare and contrast

Before discussing how the Burzynski Clinic does personalized cancer therapy, I think it?s worth looking at how real scientists do it right now. In essence, real scientists use information of the sort provided by Caris Life Sciences or by their own genomic testing to stratify patients and identify them for clinical trials. An excellent example of this is a study hot off the presses in the November issue of Science Translational Medicine by a group from my very own alma mater, the University of Michigan entitled Personalized Oncology Through Integrative High-Throughput Sequencing: A Pilot Study. In essence, the investigators (Roychowdhury et al) began a pilot study to study the practical difficulties involved in using high-throughput sequencing in clinical oncology, which they identified in the introduction:

Translating high-throughput sequencing for biomarker-driven clinical trials for personalized oncology presents unique logistical challenges, including (i) the identification of patients who could benefit, (ii) the development of an informed consent process that includes a way to deal with incidental findings, (iii) the implementation of efficient and integrative computational pipelines for data analysis, (iv) the selection of the results that should be disclosed to patients, and (v) the completion of the sequencing analysis in a cost-effective and clinically relevant time frame (Table 1). We implemented an exploratory study that we call the Michigan Oncology Sequencing Project (MI-ONCOSEQ) to address these challenges.

The challenges, and the response of investigators, are well described in Table I:

Before undertaking this study in actual humans, in order to verify that their sequencing strategy would work, Roychowdry et al first grew in mice xenografts made from tissue taken from the tumors of two patients with metastatic prostate cancer. They performed their genomic analysis and found that one carried a common gene fusion found in prostate cancer and another previously undescribed gene fusion. They also found the androgen receptor gene was amplified and two tumor suppressors were inactivated. For purposes of the study, they set up a special tumor board to evaluate their findings and decide what clinical trials would be best for a patient. The authors then tried their strategy on two actual patients, one with colorectal cancer and one with melanoma. The tumor board suggested a combination of inhibitors that would be suitable for each patient on clinical trial. Unfortunately, at the time there were no appropriate clinical trials. This is the sort of preliminary work that needs to be done before genomic analysis of individual patient tumors, as will the implementation of clinical trials that patients can be assigned to based on their genomic information.

Other studies have tried to match genomic information gleaned from each patient?s tumor to individualized therapies with mixed results. One interesting approach was published about a year ago in the Journal of Clinical Oncology by a group from the Translational Genomics Institute (TGEN) led by Daniel D. Van Hoff entitled Pilot Study Using Molecular Profiling of Patients? Tumors to Find Potential Targets and Select Treatments for Their Refractory Cancers, which uses an innovated, albeit controversial N of 1 trial design, with each patient serving as his own control.

Now let?s take a look at how the Burzynski Clinic does it, at least as far as I can figure out from my various sources and from Ms. Trimble. In response to my query about personalized gene-targeted therapy offered by the Burzynski Clinic, Ms. Trimble stated that a gene expression analysis is performed, as well as mutational analysis, FISH, immunohistochemistry for selected genes and that a blood test is also performed to measure the ?concentration of proteins which are products of most important oncogenes.? How on earth they do this latter test, I really don?t know, because most oncogenes are not secreted proteins. Next, according to Ms. Trimble, the ?medications which are shown to be best candidates for treatment, as well as those which are poor candidates, are identified from FDAs? approved gene targeted medications and chemotherapy drugs list.? In addition, drugs are supposedly selected based on the patient?s clinical information, standard of care, FDA indication, data from phase II and III clinical trials. On the surface, up to this point it all sounded reasonable and not unlike what is being done at quite a few big cancer centers, hence my question (which was never answered to my satisfaction) of what Burzynski is doing that is different from (and presumably believed by Burzynski to be superior to) what everyone else is doing.

Then there was a hint. In addition, Burzynski then formulates a preliminary treatment plan that ?will consist of medications which should cover approximately between 100 to 200 genes,? after sometimes doing a SNP analysis to ?eliminate drugs which are not metabolized properly.? The result, or so it is claimed, is a set of drugs that have ?synergistic activity which permits reduction of doses.? But why 100 to 200 genes? The very idea of targeted therapy is to hit the bare minimum of targets necessary to eradicate or control the tumor. Burzynski is going against the very concept of targeted therapy by making sure his therapy hits ?100 genes,? a claim that resonates from what he said in the movie about him I reviewed last week. According to Ms. Trimble, ?Antineoplastons and their prodrug, phenyl butyrate, are important ingredients of the combination because they cover the spectrum of approximately 100 genes.?

To support this claim, Ms. Trimble also sent me two papers from the Burzynski Clinic, both of which appeared in a journal I had never heard of before, the Journal of Cancer Therapy, which is clearly not indexed on PubMed because these papers never showed up when I searched PubMed for Burzynski. One described Burzynski?s approach for triple negative breast cancer (TNBC), the other for esthesioneuroblastoma and nonsmall cell lung cancer. What I found odd about both of these papers is that neither of them really examined whole genome expression profiling, although the paper about triple negative breast cancer did mention measuring the expression of ?important? oncogenes. Meanwhile, the paper on esthesioneuroblastoma and nonsmall cell lung cancer primarily used sodium phenylbutyrate rather than any sort of gene targeting. The significance of this will become apparent in part III of this series, when I return to a discussion of antineoplastons. In the meantime, I note that, while the esthesioneuroblastoma is mildly interesting, it is a case report. I also note that the TNBC paper is a case report and small series in which a cocktail of targeted therapies plus chemotherapy appear to have produced somewhat durable responses. Unfortunately, in the absence of a control group or a clear prospective rationale for choosing these therapies, it?s hard for me to get too excited, particularly given that we don?t know the denominator; in other words, we don?t know how many patients with TNBC Burzynski has treated with this regimen who didn?t respond. We also don?t know the survival rates for these patients, only response rates.

It turns out that perhaps the best description of what ?personalized? treatment means in Dr. Burzynski?s hands comes from the Texas Medical Board?s complaint against him, which can be found over at the Ministry of Truth or Casewatch. This complaint is based on the cases of two patients. First, here?s Patient A, who is described in the complaint thusly:

1. Patient A:

a. In approximately May of 2008, Patient A presented to Respondent with breast cancer that had metastasized to her brain, lung, and liver.

b. Respondent prescribed a combination of five immunotherapy agents ? phenylbutyrate, erlotinib, dasatinib, vorinostat, and sorafenib-which are not approved by the Food and Drug Administration (?FDA?) for the treatment of breast cancer, and which do not meet the FDA?s regulations for the use of off-label drugs in breast cancer therapy.

c. In combination with the five immunotherapy agents, Patient A was prescribed capecitabine, a chemotherapy agent. The concurrent prescription of five immunotherapy agents in combination with a chemotherapy agent resulted in Patient A suffering unwarranted side effects.

d. Respondent owned the clinic pharmacy from which the multiple drugs were ordered. Respondent failed to affirmatively disclose to Patient A his ownership interest in the pharmacy.

This is what?s known as ?throwing everything but the kitchen sink? at the tumor without any thought of interactions, as most of these agents have no proven role in the treatment of breast cancer. For example, erlotinib (brand name: Tarceva) is used to treat pancreatic cancer and non-small cell lung cancer. It works by inhibiting the tyrosine kinase of the epidermal growth factor receptor (EGFR) and is not FDA-approved for breast cancer. However, it?s not unreasonable to think that it could work in breast cancer, as EGFR is believed to be important in some breast cancers, which is why this is an area of active research. Dasatinib (trade name: Sprycel) is also a kinase inhibitor. It inhibits the Src family tyrosine kinase. Vorinostat is a histone deacetylase inhibitor approved for use against cutaneous T-cell lymphoma. Finally, Sorafenib is another tyrosine kinase inhibitor that inhibits the tyrosine kinases of different receptors, as well as raf kinases. The big problem with this sort of approach is that the more drugs you add, no matter how ?targeted? they are, the more chance for interactions that increase toxicity, and throwing all these kinase inhibitors together in a cocktail with chemotherapy is a recipe for disaster, particularly because such cocktails haven?t been tested in proper phase I clinical trials to evaluate toxicity. They?re also all incredibly expensive as well, and Dr. Burzynski sells them through his own pharmacy.

Patient B appears to be the patient with esthesioneuroblastoma whose case report I described above. This is the relevant passage from the complaint:

Follow-up magnetic resonance imaging (?MRI?) scans were conducted in approximately August and December of 2003, and March of 2004, which showed progressive disease. Patient B was continued on phenylbutyrate during this 11 -month time period, and was not sufficiently informed about the drug?s lack of efficacy on her disease.

Which sounds rather unlike the glowing case report, now, doesn?t it?

Based on these cases, the Texas Medical Board accuses Dr. Burzynski of:

  • failure to meet the standard of care;
  • negligence in performing medical services;
  • lack of diligence
  • lack of informed consent;
  • nontherapeutic prescribing;
  • unprofessional conduct;
  • off-label prescribing that does not meet standards for off-label use unless an exemption is obtained.

These are aggravated by:

  1. Harm to one or more patients;
  2. Economic harm to any individual or entity and the severity of such harm;
  3. Severity of patient harm;
  4. One or more violations that involve more than one patient; increased potential harm to the public;
  5. Intentional, premeditated, knowing, or grossly negligent act constituting a violation;
  6. Prior similar violations

If the Texas Medical Board?s charges are upheld, then this is how Dr. Burzysnki does ?personalized, gene-targeted therapy.?

Compare how Dr. Burzynski does it to how U. of M. does it, or to how TGEN does it, and there is a world of difference. More than anything, the way Burzynski does it resembles a pale imitation of how how Steve Jobs did it, as he has nothing even approaching expertise and intellectual firepower of the experts whom Jobs recruited to help him and without the extend and breadth of data upon which those experts based their recommendations. Unfortunately, we all know what the end result of ?trying to stay one step ahead of the tumor? using targeted therapy was in Jobs? case. That?s because cancer is hard, and even when we think we know the intracellular signaling pathways that have been disrupted there?s usually a level of complexity beyond that which we don?t understand.

The cost

It?s very telling to look at the literature that Dr. Burzynski sends to prospective patients, one example of which is reproduced by Xeno. For example, rather than summarizing sound papers describing well-designed clinical trials, Dr. Burzynski only lists ?response rates.? Looking at the table included in the literature, I noticed immediately that Dr. Burzynski says nothing about survival rates, only what he calls ?objective response rates,? which are not defined in a meaningful way. The pamphlet defines them as as anything from an ?improvement? (defined as ?decrease in size of the tumors, not confirmed yet by the second follow-up radiological measurement?) to ?complete disappearance of all signs of cancer. This is not how it?s done. There are standardized ways of measuring tumor response agreed upon by radiologists and oncologists, such as the RECIST criteria. Burzynski lumps all responses together in an oncologically meaningless way. Also remember, Burzynski often uses standard-of-care chemotherapy along with his antineoplastons; so we would expect some responses. The chart above, however, is virtually meaningless, if only for the simple reason that initial tumor response often doesn?t correlate to overall survival, and overall survival is what we care about. As Xeno also notes, the out-of-pocket costs are staggering. Contrast this to the clinical trials I mentioned above, where patients do not pay for the genomic profiling or chemotherapy.

As bad, Dr. Burzynski massively oversells what he is doing. For example, one patient writes:

The gene targeted approach makes sense to me, in essence what these doctors are doing is testing your blood and tumor samples, what they look for is genetic markers that tell them what receptors and or channels your tumors are using to grow. When they?ve identified these receptors and or markers they begin to prescribe off label medications to suppress the channels that are allowinng the tumors thrive.

If only that were what Dr. Burzynski were really doing under the auspices of clinical trials like the University of Michigan trial! And if only he weren?t charging patients massive amounts of money to do it, while telling patients things like this, quoted from Suzanne Somers? book:

SS: When you talk about gene-targeted therapy, is that chemotherapy?

SB: No, this is not chemotherapy. Most of my patients have already had chemotherapy and it has not been effective for them. The beauty of antineoplastons is that they are natural compounds. They exist in our blood and form a protective system against cancer. You don?t expect to have toxic side effects from chemicals which are normal in your blood. And they cover a broad spectrum of genes, which means from the very beginning we have a much better chance to help this patient.

Of course, chemotherapy affects more than hundreds of genes; so by Dr. Burzynski?s criteria cytotoxic chemotherapy should be the best therapy of all because it affects the most genes!

As we have seen, Dr. Burzynski does indeed give chemotherapy to his patients. He combines that chemotherapy with a gmish of ?targeted therapies? based on a commercially available but not FDA-approved gene expression profile test and calls it ?personalized gene-targeted therapy.? Unfortunately, in my not-so-humble opinion, he doesn?t have a scientifically supportable rationale for combining his targeted therapies. Instead, skirting the line between science and pseudoscience, Dr. Burzynski gives every appearance of recklessly throwing together untested combinations of targeted agents willy-nilly to see if any of them stick but without having a systematic plan to determine when or if he has successfully matched therapy to genetic abnormality. In this, Dr. Burzynski does indeed resemble alternative medicine practitioners when they claim to ?individualize? treatments. The result is that his outcomes are basically uninterpretable, making them useless for determining whether his approach works. At the same time, the cost is personal in terms of giving patients false hope and of unnecessary side effects for little or no benefit and financial in terms of bills that run from tens to hundreds of thousands of dollars charged to patients who are so desperate that they will pay them for even a glimmer of hope.

There is still one more issue to be explored in the strange case of Dr. Stanislaw Burzynski. My next installment will return to antineoplastons and, hopefully, close the loop on this tale.

Source: http://www.sciencebasedmedicine.org/index.php/stanislaw-burzynskis-personalized-gene-targeted-cancer-therapy/

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Monday, November 21, 2011

Lawmakers restore $12.5M in meth cleanup funds (AP)

ST. LOUIS ? The war on methamphetamine has gotten some support from Congress ? millions of dollars to clean up the toxic waste generated by clandestine meth labs.

President Barack Obama signed a wide-ranging appropriations bill Friday that included the restoration of $12.5 million for meth lab cleanup.

"It's an awesome thing," said Tommy Farmer, state meth task force coordinator for Tennessee, the state that led the nation in the number of meth labs in 2010. "It keeps us in the fight so we can combat these things."

The measure restores funding lost in February, when federal meth lab cleanup money through the Community Oriented Policing Services program ran out, and was not renewed. The program provided $19.2 million for meth lab cleanup in 2010.

That was devastating for some areas of the country hit hard by meth. An Associated Press investigation in August found that without federal cleanup money, many local police and sheriff's departments were far less likely to seek out meth labs they couldn't afford to clean up.

The AP investigation found that the number of labs seized dropped sharply in states that relied heavily on federal funding for cleanup: Down 32 percent through mid-year in Tennessee, 33 percent in Arkansas, 35 percent in Michigan and 62 percent in Alabama.

Experts in those states said it wasn't because meth use was on the decline. Without federal money, the burden for cleanup fell to the city or county where the meth lab was found, and in an era of dwindling local revenues, agencies simply couldn't afford the cleanup.

Police weren't turning a blind eye to meth, but stopped sending agents undercover, conducting door-to-door investigations and setting up stakeouts aimed at catching meth-makers, experts said.

"The words I used were they were less proactive," Farmer said.

Lawmakers from both parties lauded the restoration of the cleanup money.

U.S. Rep. Russ Carnahan, a St. Louis Democrat, said meth abuse "destroys communities, tearing families apart and devastating our environment-with every pound of meth producing five to six pounds of toxic waste."

He said he advocates a response to meth abuse that "leverages federal, state, and local resources to tackle all aspects of the problem, from research, education, and prevention to law enforcement, treatment and remediation."

A spokesman for U.S. Rep. Scott DesJarlais, R-Tenn., said restoration of the meth cleanup money was a "positive" from the appropriations bill, even as DesJarlais opposed the spending measure overall.

"The congressman understands how serious of an issue meth production is in the state of Tennessee and remains committed to ensuring that law enforcement is provided with the necessary resources to safely and efficiently dispose of meth labs," said Robert Jameson, a spokesman for DesJarlais.

Cleaning up meth labs is expensive, even the small "shake-and-bake" labs that are little more than a 2-liter soda bottle filled with the toxic ingredients. Because meth is made using a volatile mix of ingredients such as battery acid, drain cleaner and ammonia, only crews with specialized training are allowed to handle the materials found in labs. The waste and debris cannot be dumped in a regular landfill, only in specially approved waste sites.

As a result, typical cost of remediating a single lab is $2,500 to $5,000.

Some states, like Missouri and Kentucky, have developed their own lab cleanup programs, making them far less dependent upon federal money. Those states have placed containers in various locations and train local police on cleanup.

But many other states rely on the COPS money, which requires a federally approved crew to come in for the cleanup, usually from out of state, with the travel time driving up the cost.

Many states that previously relied on COPS funding are developing their own container systems, including Michigan and Tennessee, which began its program this summer. Arkansas also is looking at a container program.

Farmer said that while the $12.5 million falls short of the $19.2 million for last year, the improved efficiencies of container programs should allow for local police to again get aggressive with meth enforcement.

"We're going to be able to stretch that $12.5 million a lot further," he said.

Source: http://us.rd.yahoo.com/dailynews/rss/environment/*http%3A//news.yahoo.com/s/ap/20111121/ap_on_re_us/us_meth_cleanup

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Friday, November 18, 2011

Professor: Troop care packages are 'shameful'

A Massachusetts law professor criticized as "shameful" plans by colleagues to collect care packages for U.S. troops, saying current support for the military was "not particularly rational."

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Professor Michael Avery, a specialist in constitutional law at Suffolk University Law School in Boston, also questioned why the institution had an "oversized flag" in its lobby, according to an internal email whose contents were disclosed by a city radio station on Thursday.

"I think it is shameful that it is perceived as legitimate to solicit in an academic institution for support for men and women who have gone overseas to kill other human beings," he wrote in the email, which was republished in full on the website of 96.9FM Boston Talks radio host Michael Graham.

?The United States may well be the most war prone country in the history of civilization," he added.

His comments were dismissed by Sen. Scott Brown, R-Mass., who told the Boston Herald on Monday: ?I returned from Afghanistan recently. I know how much our troops value hearing from friends, neighbors, loved ones and even anonymous well-wishers who appreciate the job they are doing.

"It?s sad there are still some people who fail to appreciate the selfless sacrifice of our military, but it makes me angry when they openly campaign to deprive our troops of the love and support they deserve."

He continued: ?I wish Professor Avery could witness for himself the joy that a small gift can bring to a soldier, especially around the holidays."

Calls to Prof. Avery were being automatically routed to the public affairs office of the law school on Wednesday, and that the department did not immediately respond to inquiries from msnbc.com.

However, a statement from Acting President and university Provost Barry Brown said the law school had a history of defending "freedom of expression."

The message, published on the institution's website, said: "We respect the right of our faculty members to exercise academic freedom and support all members of our community in speaking freely and expressing their opinions."

It added: "Along with our support of freedom of expression, Suffolk University has a long and proud history of supporting our men and women who have served their country in the armed forces through many programs and community outreach."

Prof. Avery's email, which came in response to a campus-wide message asking for care packages, added: "Why do we continue to have this oversized flag in our lobby?? Why are we sending support to the military instead of Americans who are losing their homes, malnourished, unable to get necessary medical care, and suffering from other consequences of poverty?"

? 2011 msnbc.com

Source: http://www.msnbc.msn.com/id/45323953/ns/us_news-life/

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Tuesday, November 15, 2011

Obama seeks deals, meets allies on world stage

President Barack Obama speaks at a luau after the leaders dinner at the APEC Summit in Honolulu, Saturday, Nov. 12, 2011. (AP Photo/Charles Dharapak)

President Barack Obama speaks at a luau after the leaders dinner at the APEC Summit in Honolulu, Saturday, Nov. 12, 2011. (AP Photo/Charles Dharapak)

U.S. President Barack Obama and his wife Michelle greet Chinese President Hu Jintao and his wife Liu Yongqing, left, before their dinner at the APEC Summit in Honolulu, Saturday, Nov. 12, 2011. (AP Photo/Koji Sasahara, Pool)

U.S. President Barack Obama and his wife Michelle greet Russian President Dmitry Medvedev before their dinner at the APEC Summit in Honolulu, Saturday, Nov. 12, 2011. (AP Photo/Koji Sasahara, Pool)

U.S. President Barack Obama and First Lady Michelle Obama greet Japanese Prime Minister Yoshihiko Noda before the APEC leaders dinner in Honolulu, on Saturday, Nov. 12, 2011. (AP Photo/Chris Carlson)

U.S. President Barack Obama and his wife Michelle walk under the big tree to meet their counterparts before their dinner at the APEC Summit in Honolulu, Saturday, Nov. 12, 2011. (AP Photo/Koji Sasahara, Pool)

(AP) ? President Barack Obama prodded the skeptical leaders of Russia and China for support in reining back Iran's nuclear ambitious, but without winning public endorsement from either man.

Neither Russian President Dmitry Medvedev nor Chinese President Hu Jintao publicly echoed Obama's push for solidarity over renewed concerns on Iran as Obama met separately on Saturday with each leader on the sidelines of a Pacific Rim economic summit here. Presiding over the gathering in his home state of Hawaii, Obama also sought to position the United States as a Pacific power determined to get more American jobs by tapping the potential of the Asia-Pacific.

For Obama, the first full day of a nine-day trip far from Washington mixed high-stakes foreign affairs diplomacy with a focus on U.S. jobs, the top domestic concern of voters who will decide next year whether to re-elect him. The president was to continue his economic advocacy Sunday at a series of meetings with leaders of the Asia-Pacific Economic Cooperation summit, a diverse group of 21 nations representing growing markets and ever-more-important alliances for the U.S.

Obama announced the broad outlines of an agreement to create a transpacific trade zone encompassing the United States and eight other nations before going into meetings with Hu and Medvedev where he raised a new report from the U.N. atomic agency. The report asserted in the strongest terms to date that Iran is conducting secret work to develop nuclear arms.

Russia and China remain a roadblock to the United States in its push to tighten international sanctions on Iran. Both are veto-wielding members of the U.N. Security Council and have shown no sign the new report will change their stand.

Alongside Medvedev, Obama said the two "reaffirmed our intention to work to shape a common response" on Iran.

Shortly after, Obama joined Hu, in a run of back-to-back diplomacy with the heads of two allies that hold complicated and at times divisive relations with the United States. Obama said that he and the Chinese leader want to ensure that Iran abides by "international rules and norms."

Obama's comments were broad enough to portray a united front without yielding any clear indication of progress. Medvedev, for his part, was largely silent on Iran during his remarks, merely acknowledging that the subject was discussed. Hu did not mention Iran at all.

White House aides insisted later that Russia and China remain unified with the United States and other allies in preventing Iran from developing nuclear weapons, and that Obama, Hu and Medvedev had agreed to work on the next steps. Deputy national security adviser Ben Rhodes said the new allegations about Iran's programs demand an international response.

"I think the Russians and the Chinese understand that," he said. "We're going to be working with them to formulate that response."

As the president held forth on the world stage, Republicans vying to compete against Obama for the presidency unleashed withering criticism in a debate in South Carolina. It was a rare moment in which foreign policy garnered attention in a campaign dominated by the flagging U.S. economy.

"If we re-elect Barack Obama, Iran will have a nuclear weapon. And if you elect Mitt Romney, Iran will not have a nuclear weapon," said Romney, a former Massachusetts governor.

Iran has insisted its nuclear work is in the peaceful pursuit of energy and research, not weaponry.

More broadly, Obama is seeking while in Hawaii to position the United States as a key player among economies that already account for 44 percent of world trade, a figure the administration believes will grow.

For businesses, Obama said, "this is where the action's going to be."

On the Pacific trade pact, Obama said details must still be worked out, but said the goal was to complete the deal by next year.

The eight countries joining the U.S. in the zone would be Australia, Brunei, Chile, Malaysia, New Zealand, Peru, Singapore and Vietnam. Obama also spoke with Japanese Prime Minister Yoshihiko Noda about Japan's interest in joining the trade bloc.

Obama will be in Honolulu through Tuesday, when he leaves for Australia before ending his trip in Indonesia.

___

AP White House Correspondent Ben Feller contributed to this report.

Associated Press

Source: http://hosted2.ap.org/APDEFAULT/386c25518f464186bf7a2ac026580ce7/Article_2011-11-13-Obama/id-08654de9f6be4917a041f6f5ea8431d5

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Monday, November 14, 2011

[OOC] Head Strong

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This is the auto-generated OOC topic for the roleplay "Head Strong"

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Sunday, November 13, 2011

Lady Gaga Unveils First Look At 'Marry The Night' Video

Singer tweets screen shot from clip showing her on a hospital gurney.
By James Montgomery


Lady Gaga
Photo: Ethan Miller/ Getty Images

Lady Gaga unveiled a Bollywood version of her "Marry the Night" video in India last month, took it to the moon in Belfast last week, and now Lady Gaga is giving fans their first glimpse of the "Marry the Night" video. From the looks of things, she's not going anywhere ... except maybe into surgery.

Gaga posted a screen shot from the "Night" clip on her Twitter account Friday (November 11) that shows her — at least we think it's her, though it might also be her male alter ego Jo Calderone — laid out on a hospital gurney, IV drip in her arm. She's being wheeled down an ornate hallway by a pair of dour-faced nurses, making the scene reminiscent of both Stanley Kubrick's "The Shining" and Milos Forman's "One Flew Over the Cuckoo's Nest."

Gaga also included a rather cryptic message with the photo: "It's not that I've been dishonest, it's just that I loathe reality."

Last month, Gaga was spotted all around New York City filming scenes for the "Marry the Night" video, including an elaborate dance sequence shot in Harlem and a set-up at the Snug Harbor Cultural Center on Staten Island.

Of course, despite all the on-set photos snapped by the paparazzi, very little is actually known about the "Marry the Night" clip. For her part, Gaga is keeping things mysterious, telling her little monsters in a separate tweet, "This will be the longest video I've released to date ... the beginning of the story I never told you."

What do you make of the first look at Gaga's "Marry the Night" video? Tell us in the comments or on our Facebook page!

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Source: http://www.mtv.com/news/articles/1674180/lady-gaga-marry-the-night-hospital.jhtml

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Penn State president: Mike McQueary placed on administrative leave

--> AAA??Nov. 11, 2011?4:10 PM ET
Penn State president: Mike McQueary placed on administrative leave
AP

Penn State football coach Joe Paterno, right, and assistant coach Mike McQueary walk the field during practice, Wednesday, Nov. 9, 2011, in State College, Pa. (AP Photo/The Citizens' Voice, Michael R. Sisak) MANDATORY CREDIT

Penn State football coach Joe Paterno, right, and assistant coach Mike McQueary walk the field during practice, Wednesday, Nov. 9, 2011, in State College, Pa. (AP Photo/The Citizens' Voice, Michael R. Sisak) MANDATORY CREDIT

Penn State University Board of Trustees member Kenneth C. Frazier, center, president of Merck & Co., is surrounded by media after being appointed by the trustees to chair a special committee to investigate the alleged child abuse on campus, in State College, Pa., Friday, Nov. 11, 2011. The Penn State University Board of Trustees who fired legendary football coach Joe Paterno and school president Graham Spanier are meeting in the wake of the massive shakeup prompted by a child sex-abuse scandal. (AP Photo/Gene J. Puskar)

Penn State interim head football coach Tom Bradley looks on during NCAA college footbal practice Thursday, Nov. 10, 2011, in State College, Pa. The defensive coordinator was appointed interim coach by Penn State's board of trustees after it fired Paterno on Wednesday night , Nov. 9, in the wake of a child sex-abuse scandal involving former assistant Jerry Sandusky. (AP Photo/The Patriot-News, Joe Hermitt)

(AP) ? Penn State president: Mike McQueary placed on administrative leave

Associated Press

Source: http://hosted2.ap.org/APDEFAULT/347875155d53465d95cec892aeb06419/Article_2011-11-11-APNewsAlert/id-1252a26656734120a1876d237bd75264

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Saturday, November 12, 2011

Google Chrome 15


As it increases in popularity, Google Chrome is becoming more and more a conduit for Google services. With this release, Chrome 15, the Internet search leader has changed just one user-facing feature?the new tab page, which has been tweaked to give more prominence to the Chrome Web app store. Though this isn't a huge improvement, Chrome remains your best Web browser, thanks to blazing speed, and ground-breaking features. ?It boasts unique features like Chrome Instant, built-in Flash and PDF display, leading Web standards support, and a minimalist application window that lets Web pages shine unimpeded.

Despite the lack of exciting new eye candy or super-duper capabilities in Chrome 15, the competition?Firefox 7 (Free, 4 stars), Internet Explorer (Free, 4 stars), Safari 5.1 (Free, 4 stars), and Opera 11.50 (Free, 4 stars)?still struggles to equal Chrome's sparse user interface and speedy operation. For this, Google Chrome remains our Editors' Choice. Its recent expansion of graphics hardware acceleration, which previously trailed that in Internet Explorer 9 and Firefox, renders Chrome's performance unrivaled on all scores.

Previous releases have brought major new features, such as bookmark syncing, a bookmark manager, a built-in PDF reader, and extensions, though others have just added speed, stability, and new standards support. The remarkable Chrome Instant loads pages before you even finish typing their addresses or titles. And in an homage to IE9, Chrome now includes graphics hardware acceleration. Its fine design, compatibility, and especially the speed have impressed the Web community enough to make Chrome the fastest growing browser in terms of market share. On this measure, it's nearing 25 percent, and poised to overtake Firefox as the number two browser. Let's take a look at what makes this browser so special.

Swift Setup
Even the setup process shows Chrome's commitment to speed: Just click the Install button on the Chrome Web page, and you'll have the browser up and running in less than a minute, with no wizard to go through and no system restart. The browser's available for Mac OS X and Linux, as well as Windows. In each platform the browser's up and running before you realize it, and it updates itself automatically in the background.

Chrome Instant Pages
Not to be confused with Chrome Instant (see below) or Google Instant (which works on all browser to load Google search results as you type), Chrome Instant Pages requires both Chrome and a site that supports the feature. Of the latter, there is now just one important one: Google Search. The idea is that when you perform a search in Google, the browser will pre-load the page for the result link you're most likely to click on.

In several tests on a slower Wi-Fi connection, however, I only noticed an occasional improvement for simple pages. It seemed only to work for the first result link. Heavy multimedia sites still took their time to load. On a very fast wired connection, some page result were extremely fast, but in that case, you don't really benefit from pre-loading. I saw a definitely faster load for grainger.com than in Opera on the same connection. The idea makes a lot of sense though, particularly for multipage articles, where it's most likely that the next link you'll hit is the one labeled "Next."

The only drawback: If the site guesses your next click wrong, page load could be slower than without Instant Pages, and you'll have wasted bandwidth loading a page you never visited. But this is a technique that's been done using JavaScript or HTML and CSS for years, so I'm not sure why we need a browser-specific solution to preloading pages, but Instant Pages does have the ability to load outside sites, rather than just pages of your own. If you don't like the idea of your browser loading pages before you click on a link, you can turn off the feature in the Under the Hood section of Options (accessible from the wrench icon), and uncheck "Predict network actions to improve page load performance."

Built-in Flash and PDF Support
Chrome is the only browser to come with Adobe Flash built in, rather than requiring a separate (and annoying) installation. And not having to perform the frequent required updates of the Flash plugin separately is another boon?it updates automatically with the browser. With version 10, many of the security issues with Flash (famously bemoaned by Apple's Steve Jobs) went away, thanks to running the plugin in an isolated sandbox so that it doesn't have access to critical system areas. But note that this sandboxing only applies to the Windows 7 and Vista versions of Chrome at this point.

Chrome boasts a PDF reader as well, so you don't have to worry about installing any Adobe plugins for viewing specialized Web content. When you load a PDF, an intuitive toolbar shows when your mouse cursor is in the southeast vicinity of the browser window. From this, you can have the document fill the width of the window, show a full page, or zoom in and out. By default, you can select text for cutting and pasting, but I couldn't copy and paste images. You can print the PDF as you would any Web page.

Chrome's PDF viewer not only does what its name implies, but also serves as a print preview feature. Unlike IE's print preview, Chrome's shows up in a tab rather than its own window. But you have to go through it to print: In IE, I can just click the printer icon to send a page to the printer if I don't want to fuss with settings. I could choose between color and B&W, portrait and landscape, and choose the target printer, or print to PDF.

An Advanced button got me into the printer's own settings dialog, but this dismissed the print preview, making me have to choose Print from the menu again. But Chrome didn't let me choose a zoom percentage for the printout as Firefox and IE did, nor did it let me turn page headers on and off or choose margin sizes in a Page Setup dialog as those two did. So Chrome's print preview is a decent start, but it's still a bit behind the competition.

Interface
Minimalism has been a hallmark of Chrome since its first beta release. Tabs are above everything, and the only row below them holds the combined search/address bar, or "Omnibox." Here you can type any part of an address or page title, and the most likely site candidates will be presented in a dropdown. Optionally you can display bookmark links in a row below this. And the control buttons on the top-right of the browser window have been reduced to the absolute minimum?just one.

Google has removed the Page icon and placed some of its functions under the Wrench choice. Some Page options have been combined into buttons on one line in the menu, such as Cut, Copy, and Paste. I like what Google's done with the Zoom choice on the menu, adding plus and minus buttons that save you from having to fly out another submenu.

Another theme in the Chrome interface is that everything looks like a Web page, displaying in the main browser window, rather than in separate dialog boxes. This includes the interfaces for History, Extensions, and Bookmarks. With version 10 the Settings page got this same treatment.

Mac users haven't been overlooked in the interface department, either. The browser now supports OS X Lion's full screen view, along with overlay scrollbars that only appear when you're scrolling. Other more minor characteristics of the OS X "Aqua" style give Chrome on the Mac a more Mac-y appearance.

Chrome Instant
This is one of the niftiest things added to Chrome in a while. Start typing a Web address in the Omnibox, and before you're even done, a page from your history or a search result page is displayed below in the main browser window. I just type "PC," and PCMag.com is already loaded. The idea was first implemented in Google search's Instant feature, but I think it's even more useful in the browser than in search, where I usually ignore it and finish typing my query anyway: Most sites we visit, we've visited before, so having them ready to go before you even finish typing is a big speeder-upper.

Chrome can also boast a less visible and less touted way of speeding up browser: it supports SPDY, an HTTP replacement that compresses header data and allows persistent connections between server and browsers. It turns out that some Google sites are already using SPDY when you browse with Chrome. As with Instant Pages, the technology is available to other Web publishers to implement, but again, Google itself is the most important player to support it.

Tabtastic
Chrome also still sports excellent tab implementation. Tabs are prominent at the top of the browser window, and you can drag them out to the desktop to create independent windows (and drag them back in later) or split them side by side ? la Windows 7 Aero Snap.

Google has put considerable thought into Chrome's new tab page, which shows links to your most-visited pages, Web apps, and recently closed tabs. In Chrome 15, the new-tab page gets a redesign, emphasizing Google's Chrome Web Store of browser-based applications?really customized Web sites that have more access to your system, such as more local storage. The new look offers two thin bars at the bottom that let you switch between Apps (showing large icons) and Most visited (showing eight thumbnails of the pages).

You can also switch between Apps and Most Visited by clicking large arrows at either side of the page. The new look may confuse some, who may wonder where there favorite sites have gone?you can no longer pin sites to the page, as you can in Opera or Internet Explorer. But you can pin a site up in the tab bar, and a corner X lets you remove a thumbnail from the Most visited view. To the right of these is a Recently Closed "dropdown" arrow, which actually pops up a clear list of closed tabs.?

If you've synced Chrome on different computers (see below), the Apps section with be the same on all. Any apps you've added on a Chrome OS machine will also appear in the browser on any other computer you log into Chrome on, and vice versa. To remove an app, you drag it to the lower right of the window, where you can imagine a trash can icon.

Source: http://feedproxy.google.com/~r/ziffdavis/pcmag/~3/ifFBy9ZYPsM/0,2817,2373853,00.asp

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Friday, November 11, 2011